execution A Data Model for describing the execution of a job on a computational resource execution.PhysicalLocationtableexecution:PhysicalLocationThe physical location of a resource execution.PhysicalLocation.ID BIGINT primary key for PhysicalLocation true false true execution.PhysicalLocation.name VARCHAR A human readable name for the location execution:PhysicalLocation.name false false true execution.PhysicalLocation.country VARCHAR Country name execution:PhysicalLocation.country false false true execution.PhysicalLocation.longitude DOUBLE Longitude in degrees execution:PhysicalLocation.longitude false false true execution.PhysicalLocation.latitude DOUBLE Latitude in degrees execution:PhysicalLocation.latitude false false true execution.ExecutionNodetableexecution:ExecutionNodeA Node where tool execution can take place execution.ExecutionNode.ID BIGINT primary key for ExecutionNode true false true execution.ExecutionNode.resourcesServiceUrl VARCHAR the execution:ExecutionNode.resourcesServiceUrl false false true execution.ExecutionNode.executionServiceUrl VARCHAR execution:ExecutionNode.executionServiceUrl false false true execution.ExecutionNode.location BIGINT the location of the node execution:ExecutionNode.location false false true FK_ExecutionNode.location execution.PhysicalLocation the location of the node execution:ExecutionNode.location execution.ExecutionNode.location execution.PhysicalLocation.ID execution.ComputeResourcetableexecution:ComputeResourceA computational resource that can be used for executing a job execution.ComputeResource.ID BIGINT primary key for ComputeResource true false true execution.ComputeResource.EXECUTIONNODE_ID BIGINT foreign key column for execution:ExecutionNode composition of execution:ComputeResource execution:ExecutionNode false false true execution.ComputeResource.name VARCHAR the name of the compute resource execution:ComputeResource.name false false true execution.ComputeResource.numberOfCores INTEGER the number of CPU cores available execution:ComputeResource.numberOfCores false false true execution.ComputeResource.memory DOUBLE the amount of RAM available in GB execution:ComputeResource.memory false false true execution.ComputeResource.gpu INTEGER whether the resource has GPU capabilities execution:ComputeResource.gpu false false true execution.ComputeResource.gpuType VARCHAR the type of GPU available, if any execution:ComputeResource.gpuType false false true FK_ExecutionNode.computeResources execution.ExecutionNode foreign key for execution:ComputeResource composition in execution:ExecutionNode execution:ExecutionNode.computeResources execution.ComputeResource.EXECUTIONNODE_ID execution.ExecutionNode.ID execution.TransferPerformancetableexecution:TransferPerformancePerformance of data transfer to/from a node execution.TransferPerformance.ID BIGINT primary key for TransferPerformance true false true execution.TransferPerformance.fromLocation BIGINT the source location of the data transfer execution:TransferPerformance.fromLocation false false true execution.TransferPerformance.throughput DOUBLE the throughput of the data transfer in bytes/second execution:TransferPerformance.throughput false false true execution.TransferPerformance.latency DOUBLE the latency of the data transfer in seconds execution:TransferPerformance.latency false false true execution.TransferPerformance.errorRate DOUBLE the error rate of the data transfer as a percentage execution:TransferPerformance.errorRate false false true execution.TransferPerformance.timestamp TIMESTAMP the timestamp of the performance measurement execution:TransferPerformance.timestamp false false true FK_TransferPerformance.fromLocation execution.PhysicalLocation the source location of the data transfer execution:TransferPerformance.fromLocation execution.TransferPerformance.fromLocation execution.PhysicalLocation.ID execution.DataNodetableexecution:DataNodeA Node where data can be stored execution.DataNode.ID BIGINT primary key for DataNode true false true execution.DataNode.storageServiceUrl VARCHAR the URL of the storage service execution:DataNode.storageServiceUrl false false true execution.DataNode.location BIGINT the location of the node execution:DataNode.location false false true FK_DataNode.location execution.PhysicalLocation the location of the node execution:DataNode.location execution.DataNode.location execution.PhysicalLocation.ID execution.DataResourcetableexecution:DataResourceA data resource that can be used as input or output for a job execution.DataResource.ID BIGINT primary key for DataResource true false true execution.DataResource.location BIGINT the location of the data execution:DataResource.location false false true execution.DataResource.size DOUBLE the size of the data resource in GB execution:DataResource.size false false true execution.DataResource.mimeType VARCHAR the mime type of the data resource execution:DataResource.mimeType false false true execution.DataResource.accessUrl VARCHAR the URL that can be used to access the data resource execution:DataResource.accessUrl false false true FK_DataResource.location execution.PhysicalLocation the location of the data execution:DataResource.location execution.DataResource.location execution.PhysicalLocation.ID execution.WorkLoadtableexecution:WorkLoadthe execution workload execution.WorkLoad.ID BIGINT primary key for WorkLoad true false true execution.ParameterValuetableexecution:ParameterValuethe value of a parameter for a job execution execution.ParameterValue.ID BIGINT primary key for ParameterValue true false true execution.ParameterValue.id VARCHAR foreign key column for execution:JobExecution composition of execution:ParameterValue execution:JobExecution false false true execution.ParameterValue.id VARCHAR foreign key column for execution:JobExecution composition of execution:ParameterValue execution:JobExecution false false true execution.ParameterValue.definition BIGINT the definition of the parameter execution:ParameterValue.definition false false true execution.ParameterValue.value VARCHAR the value of the parameter - this is intentionally very flexible to allow for different types of parameters - e.g. atomic values, files, etc execution:ParameterValue.value false false true execution.ParameterValue.isIndirect INTEGER whether the value is an indirect reference to the actual value - e.g. a file path or a URL execution:ParameterValue.isIndirect false false true FK_ParameterValue.definition pdl.ParameterDefinition the definition of the parameter execution:ParameterValue.definition execution.ParameterValue.definition pdl.ParameterDefinition.ID FK_JobExecution.inputs execution.JobExecution foreign key for execution:ParameterValue composition in execution:JobExecution execution:JobExecution.inputs execution.ParameterValue.id execution.JobExecution.id FK_JobExecution.outputs execution.JobExecution foreign key for execution:ParameterValue composition in execution:JobExecution execution:JobExecution.outputs execution.ParameterValue.id execution.JobExecution.id execution.JobExecutiontableexecution:JobExecutionthe execution of a job on a computational resource execution.JobExecution.id VARCHAR Unique job execution identifier execution:JobExecution.id true false true execution.JobExecution.runId VARCHAR this is a client supplied identifier - the system does nothing other than to return it as part of the description of the job execution:JobExecution.runId false false true execution.JobExecution.ownerID VARCHAR the identifier of the user who owns the job execution execution:JobExecution.ownerID false false true execution.JobExecution.tool VARCHAR the tool being executed execution:JobExecution.tool false false true execution.JobExecution.status VARCHAR the current status of the job execution execution:JobExecution.status false false true execution.JobExecution.executionNode BIGINT the node where the job is being executed execution:JobExecution.executionNode false false true execution.JobExecution.creationTime TIMESTAMP the time when the job execution was created execution:JobExecution.creationTime false false true execution.JobExecution.startTime TIMESTAMP the start time of the job execution execution:JobExecution.startTime false false true execution.JobExecution.endTime TIMESTAMP the time at which the job execution finished execution:JobExecution.endTime false false true execution.JobExecution.destructionTime TIMESTAMP the time at which the job execution will be destroyed execution:JobExecution.destructionTime false false true FK_JobExecution.tool tool.Tool the tool being executed execution:JobExecution.tool execution.JobExecution.tool tool.Tool.id FK_JobExecution.executionNode execution.ExecutionNode the node where the job is being executed execution:JobExecution.executionNode execution.JobExecution.executionNode execution.ExecutionNode.ID execution.PerformanceMetrictableexecution:PerformanceMetricA performance metric for a job execution execution.PerformanceMetric.ID BIGINT primary key for PerformanceMetric true false true execution.PerformanceMetric.id VARCHAR foreign key column for execution:JobExecution composition of execution:PerformanceMetric execution:JobExecution false false true FK_JobExecution.performanceMetrics execution.JobExecution foreign key for execution:PerformanceMetric composition in execution:JobExecution execution:JobExecution.performanceMetrics execution.PerformanceMetric.id execution.JobExecution.id tool Tool Data Model for defining executable tools tool.Authortabletool:AuthorDetails about an author of the image tool.Author.ID BIGINT primary key for Author true false true tool.Author.name VARCHAR Name of the author tool:Author.name false false true tool.Author.email VARCHAR Contact email address for the author tool:Author.email false false true tool.Author.role VARCHAR Role of the author; default maintainer tool:Author.role false false true tool.Author.github VARCHAR GitHub username tool:Author.github false false true tool.Author.gitlab VARCHAR GitLab username tool:Author.gitlab false false true tool.Author.orcid VARCHAR ORCID identity tool:Author.orcid false false true tool.Author.affiliation VARCHAR Affiliation tool:Author.affiliation false false true tool.OCIRegistrytabletool:OCIRegistryDetails about the OCIcontainer registry tool.OCIRegistry.ID BIGINT primary key for OCIRegistry true false true tool.OCIRegistry.host VARCHAR Container registry hostname tool:OCIRegistry.host false false true tool.OCIRegistry.project VARCHAR Container registry project/namespace tool:OCIRegistry.project false false true tool.Discoverytabletool:DiscoveryDiscovery metadata mapped to OCI labels/annotations tool.Discovery.ID BIGINT primary key for Discovery true false true tool.Discovery.imageTitle VARCHAR Human-readable title (schema field: title) tool:Discovery.imageTitle false false true tool.Discovery.description VARCHAR Human-readable description (1..255 chars) tool:Discovery.description false false true tool.Discovery.source VARCHAR Source code URL tool:Discovery.source false false true tool.Discovery.url VARCHAR Project URL tool:Discovery.url false false true tool.Discovery.documentation VARCHAR Documentation URL tool:Discovery.documentation false false true tool.Discovery.version VARCHAR Packaged software version tool:Discovery.version false false true tool.Discovery.revision VARCHAR Source control revision; default unknown tool:Discovery.revision false false true tool.Discovery.created TIMESTAMP Metadata processing timestamp (UTC) tool:Discovery.created false false true tool.Discovery.authors BIGINT Responsible people/organization tool:Discovery.authors false false true tool.Discovery.licenses VARCHAR SPDX license expression tool:Discovery.licenses false false true tool.Discovery.keywords VARCHAR Discovery/search keywords tool:Discovery.keywords false false true tool.Discovery.domain VARCHAR Scientific domains; default astronomy; min_length=1 tool:Discovery.domain false false true tool.Discovery.kind VARCHAR tool:Discovery.kind false false true tool.Discovery.tools VARCHAR Scientific software packages included tool:Discovery.tools false false true tool.Discovery.isBase INTEGER Whether this is a certified base image that should be used as a parent image for derived images tool:Discovery.isBase false false true tool.Discovery.deprecated INTEGER Deprecation status; default false tool:Discovery.deprecated false false true FK_Discovery.authors tool.Author Responsible people/organization tool:Discovery.authors tool.Discovery.authors tool.Author.ID tool.EnvVartabletool:EnvVarEnvironment variable map entry tool.EnvVar.ID BIGINT primary key for EnvVar true false true tool.EnvVar.id VARCHAR foreign key column for tool:Tool composition of tool:EnvVar tool:Tool false false true tool.EnvVar.name VARCHAR Environment variable name tool:EnvVar.name false false true tool.EnvVar.value VARCHAR Environment variable value tool:EnvVar.value false false true FK_Tool.env tool.Tool foreign key for tool:EnvVar composition in tool:Tool tool:Tool.env tool.EnvVar.id tool.Tool.id tool.Vulnerabilitytabletool:Vulnerabilitya known security vulnerability tool.Vulnerability.ID BIGINT primary key for Vulnerability true false true tool.Vulnerability.SECURITYMETADATA_ID BIGINT foreign key column for tool:SecurityMetadata composition of tool:Vulnerability tool:SecurityMetadata false false true tool.Vulnerability.cve VARCHAR the identifier for the vulnerability tool:Vulnerability.cve false false true FK_SecurityMetadata.vulnerabilities tool.SecurityMetadata foreign key for tool:Vulnerability composition in tool:SecurityMetadata tool:SecurityMetadata.vulnerabilities tool.Vulnerability.SECURITYMETADATA_ID tool.SecurityMetadata.ID tool.Compliancetabletool:Complianceattestation information tool.Compliance.ID BIGINT primary key for Compliance true false true tool.Compliance.SECURITYMETADATA_ID BIGINT foreign key column for tool:SecurityMetadata composition of tool:Compliance tool:SecurityMetadata false false true FK_SecurityMetadata.compliance tool.SecurityMetadata foreign key for tool:Compliance composition in tool:SecurityMetadata tool:SecurityMetadata.compliance tool.Compliance.SECURITYMETADATA_ID tool.SecurityMetadata.ID tool.SecurityMetadatatabletool:SecurityMetadataSecurity metadata for a tool image tool.SecurityMetadata.ID BIGINT primary key for SecurityMetadata true false true tool.SecurityMetadata.signature VARCHAR a digest style signature tool:SecurityMetadata.signature false false true tool.ToolImagetabletool:ToolImageDefinition of a tool image tool.ToolImage.ID BIGINT primary key for ToolImage true false true tool.ToolImage.registry BIGINT OCI registry details tool:ToolImage.registry false false true tool.ToolImage.parentImage BIGINT Parent image reference tool:ToolImage.parentImage false false true FK_ToolImage.registry tool.OCIRegistry OCI registry details tool:ToolImage.registry tool.ToolImage.registry tool.OCIRegistry.ID FK_ToolImage.parentImage tool.ToolImage Parent image reference tool:ToolImage.parentImage tool.ToolImage.parentImage tool.ToolImage.ID tool.BuildProcesstabletool:BuildProcessHow the tool image is built tool.BuildProcess.ID BIGINT primary key for BuildProcess true false true tool.BuildProcess.buildCommand VARCHAR The command used to build the image, e.g. 'docker build .' tool:BuildProcess.buildCommand false false true tool.BuildProcess.buildContext VARCHAR The context directory for the build, e.g. './' tool:BuildProcess.buildContext false false true tool.BuildProcess.dockerfilePath VARCHAR The path to the Dockerfile, e.g. './Dockerfile' tool:BuildProcess.dockerfilePath false false true tool.Tooltabletool:ToolDefinition of a Library Tool tool.Tool.id VARCHAR Unique tool identifier tool:Tool.id true false true tool.Tool.image BIGINT Tool container image reference tool:Tool.image false false true tool.Tool.command VARCHAR Tokenized initial command; supports {{inputs.key}} min_length=1 tool:Tool.command false false true FK_Tool.image tool.ToolImage Tool container image reference tool:Tool.image tool.Tool.image tool.ToolImage.ID tool.PerformanceProfiletabletool:PerformanceProfileA performance profile for Tool execution tool.PerformanceProfile.ID BIGINT primary key for PerformanceProfile true false true tool.ProcessorScalingtabletool:ProcessorScalingThe scaling behaviour of a tool with respect to the number of processors used tool.ProcessorScaling.ID BIGINT primary key for ProcessorScaling true false true tool.DataScalingtabletool:DataScalingThe scaling behaviour of a tool with respect to the size of the input data tool.DataScaling.ID BIGINT primary key for DataScaling true false true pdl Parameter Data Model for tool inputs and outputs pdl.ParameterDefinitiontablepdl:ParameterDefinitionthe definition of a parameter pdl.ParameterDefinition.ID BIGINT primary key for ParameterDefinition true false true pdl.ParameterDefinition.TOOLINTERFACE_ID BIGINT foreign key column for pdl:ToolInterface composition of pdl:ParameterDefinition pdl:ToolInterface false false true pdl.ParameterDefinition.name VARCHAR Parameter name pdl:ParameterDefinition.name false false true pdl.ParameterDefinition.description VARCHAR Parameter description pdl:ParameterDefinition.description false false true pdl.ParameterDefinition.kind UNKNOWN The kind of the parameter pdl:ParameterType false false true pdl.ParameterDefinition.semantics_ucd VARCHAR a base type for semantics pdl:ParameterSemantics false false true FK_ToolInterface.parameters pdl.ToolInterface foreign key for pdl:ParameterDefinition composition in pdl:ToolInterface pdl:ToolInterface.parameters pdl.ParameterDefinition.TOOLINTERFACE_ID pdl.ToolInterface.ID pdl.ParameterGrouptablepdl:ParameterGroupa group of parameter Definitions pdl.ParameterGroup.ID BIGINT primary key for ParameterGroup true false true pdl.ParameterGroup.TOOLINTERFACE_ID BIGINT foreign key column for pdl:ToolInterface composition of pdl:ParameterGroup pdl:ToolInterface false false true pdl.ParameterGroup.name VARCHAR Group name pdl:ParameterGroup.name false false true FK_ToolInterface.groups pdl.ToolInterface foreign key for pdl:ParameterGroup composition in pdl:ToolInterface pdl:ToolInterface.groups pdl.ParameterGroup.TOOLINTERFACE_ID pdl.ToolInterface.ID pdl.ParameterOrGrouptablepdl:ParameterOrGroupa 'choice' type pdl.ParameterOrGroup.ID BIGINT primary key for ParameterOrGroup true false true pdl.ParameterOrGroup.PARAMETERGROUP_ID BIGINT foreign key column for pdl:ParameterGroup composition of pdl:ParameterOrGroup pdl:ParameterGroup false false true pdl.ParameterOrGroup.param BIGINT pdl:ParameterOrGroup.param false false true pdl.ParameterOrGroup.group BIGINT pdl:ParameterOrGroup.group false false true FK_ParameterOrGroup.param pdl.ParameterDefinition pdl:ParameterOrGroup.param pdl.ParameterOrGroup.param pdl.ParameterDefinition.ID FK_ParameterOrGroup.group pdl.ParameterGroup pdl:ParameterOrGroup.group pdl.ParameterOrGroup.group pdl.ParameterGroup.ID FK_ParameterGroup.members pdl.ParameterGroup foreign key for pdl:ParameterOrGroup composition in pdl:ParameterGroup pdl:ParameterGroup.members pdl.ParameterOrGroup.PARAMETERGROUP_ID pdl.ParameterGroup.ID pdl.ToolInterfacetablepdl:ToolInterfaceThe definition of the tool interface pdl.ToolInterface.ID BIGINT primary key for ToolInterface true false true pdl.ToolInterface.input BIGINT The group of of parameters that are required for tool execution - i.e. input pdl:ToolInterface.input false false true pdl.ToolInterface.output BIGINT The group of parameters that are produced by tool execution - i.e. output pdl:ToolInterface.output false false true FK_ToolInterface.input pdl.ParameterGroup The group of of parameters that are required for tool execution - i.e. input pdl:ToolInterface.input pdl.ToolInterface.input pdl.ParameterGroup.ID FK_ToolInterface.output pdl.ParameterGroup The group of parameters that are produced by tool execution - i.e. output pdl:ToolInterface.output pdl.ToolInterface.output pdl.ParameterGroup.ID